Matched Cohorts
What you're looking at: cohorts where the same patients were profiled with two or more molecular modalities, so instead of cross-referencing accessions by hand, you can go straight from methylation to RNA-seq to spatial data for the same tumors. This is the highest-value view in the registry for planning a multi-omic analysis. 18 cohorts found.
COHORT 01
5 linked records · ~472 total samplesBulk RNA-seqsnRNA-seqWESCNV / SNP arrayProteomics (bulk MS)DNA methylation (array)
- Bulk RNA-seqRNA-sequencing of meningiomas for integrative molecular classificationNassiri et al., 2021EGAS00001004982, EGAD00001007494
- snRNA-seqSingle-nucleus RNA-sequencing of meningiomasNassiri et al., 2021EGAS00001004982, EGAD00001007677
- WESCNV / SNP arrayBulk RNA-seqProteomics (bulk MS)Meningioma (University of Toronto, Nature 2021)Nassiri et al., 2021mng_utoronto_2021
- DNA methylation (array)Meningioma methylation analysis.Nassiri et al., 2021GSE180061
- Proteomics (bulk MS)Global proteomic profiles of meningioma tissues reveal proteogenomic subtypesNassiri et al., 2021MSV000086901
COHORT 02
3 linked records · ~164 total samplesTargeted panel sequencingBulk RNA-seq
- Targeted panel sequencingAnaplastic_Meningioma_WGS_X10Collord et al., 2018EGAS00001000859, EGAD00001001267
- Targeted panel sequencingAnaplastic_Meningioma_V3__cancer_gene_panelCollord et al., 2018EGAS00001001155, EGAD00001001430
- Bulk RNA-seqTranscriptome_analysis_of_anaplastic_meningiomasCollord et al., 2018EGAS00001001873, EGAD00001003255
COHORT 03
2 linked records · ~106 total samplesWESBulk RNA-seq
- WESRecurrent somatic mutations in POLR2A define a distinct subset of meningiomas: Somatic exome variantsClark et al., 2016EGAS00001001916, EGAD00001002650
- Bulk RNA-seqRecurrent somatic mutations in POLR2A define a distinct subset of meningiomas [RNA-seq]Clark et al., 2016GSE85133
COHORT 04
3 linked records · ~78 total samplesWESBulk RNA-seqDNA methylation (array)
- WESWhole Exome Sequencing for Radiation-Induced MeningiomasAgnihotri et al., 2017EGAS00001002317, EGAD00001004358
- Bulk RNA-seqRNA seq on 19 samples of Radiation-Induced MeningiomasAgnihotri et al., 2017EGAS00001002318, EGAD00001004358
- DNA methylation (array)NF2 disruption by genomic rearrangments drives a subset of radiation induced meningiomasAgnihotri et al., 2017GSE83933
COHORT 05
2 linked records · ~165 total samplesDNA methylation (array)Bulk RNA-seq
- DNA methylation (array)Multisite methylation profiling of primary human meningiomaVasudevan et al., 2020GSE151067
- Bulk RNA-seqMultisite methylation profiling of primary human meningioma [RNA-seq]Magill et al., 2020GSE151921
COHORT 06
2 linked records · ~43 total samplesCNV / SNP arrayDNA methylation (array)
- CNV / SNP arrayDNA Methylation Signatures Differentiate Meningiomas from Normal Dura [OmniSNP]Wedemeyer et al., 2022GSE176457
- DNA methylation (array)DNA Methylation Signatures Differentiate Meningiomas from Normal Dura [HumanMethylation450]Wedemeyer et al., 2022GSE178139
COHORT 07
3 linked records · ~760 total samplesDNA methylation (array)Bulk RNA-seqscRNA-seq
- DNA methylation (array)Meningioma DNA methylation grouping reveals biologic drivers and therapeutic vulnerabilities (array)Choudhury et al., 2022GSE183647
- Bulk RNA-seqRNA sequencing of meningiomasChoudhury et al., 2022GSE183653
- scRNA-seqSingle-cell RNA sequencing of meningiomasChoudhury et al., 2022GSE183655
COHORT 08
2 linked records · ~220 total samplesDNA methylation (array)Bulk RNA-seq
- DNA methylation (array)Multiple approaches converge on three biological subtypes of meningioma and extract new insights from published studies [Methylation array]Bayley et al., 2022GSE189521
- Bulk RNA-seqMultiple approaches converge on three biological subtypes of meningioma and extract new insights from published studies [RNA-Seq]Bayley et al., 2022GSE189672
COHORT 09
2 linked records · ~14 total samplesscRNA-seqBulk RNA-seq
- scRNA-seqSingle-cell atlas of the human brain vasculature across development, adulthood and disease [meningioma subset, scRNA-seq]Wälchli et al., 2024GSE256490
- Bulk RNA-seqSingle-cell atlas of the human brain vasculature across development, adulthood and disease [meningioma subset, bulk RNA-seq]Wälchli et al., 2024GSE256492
COHORT 10
2 linked records · ~1378 total samplesDNA methylation (array)Bulk RNA-seq
- DNA methylation (array)Meningioma methylation dataWang et al., 2024GSE270371
- Bulk RNA-seqRetrospective meningiomas RNA-sequencing data.Wang et al., 2024GSE270638
COHORT 11
2 linked records · ~71 total samplesDNA methylation (array)Bulk RNA-seq
- DNA methylation (array)Molecular signatures define BAP1-altered meningioma as a distinct CNS tumor with deregulation of Polycomb repressive complex target genesSievers et al., 2025GSE284758
- Bulk RNA-seqMolecular signatures define BAP1-altered meningioma as a distinct CNS tumor with deregulation of Polycomb repressive complex target genesSievers et al., 2025GSE287322
COHORT 12
2 linked records · ~56 total samplesscRNA-seqBulk RNA-seq
- scRNA-seqMeningioma microenvironment harbors a rich immune landscape with therapeutic implications (Single-cell RNA-seq part)Guo et al., 2026GSE289349
- Bulk RNA-seqMeningioma microenvironment harbors a rich immune landscape with therapeutic implications (Bulk RNA-seq part)Guo et al., 2026GSE290805
COHORT 13
2 linked records · ~16 total samplesBulk RNA-seqMultiome
- Bulk RNA-seqSTING activation induces cytotoxic and immune responses in meningiomas via inflammatory cell death pathwaysYoungblood et al., 2026GSE297637
- MultiomeSTING activation induces cytotoxic and immune responses in meningiomas via inflammatory cell death pathways [scMulti-omics]Youngblood et al., 2026GSE297758
COHORT 14
2 linked records · ~241 total samplesBulk RNA-seqDNA methylation (array)
- Bulk RNA-seqDNA methylation profiling identifies long-range epigenetic silencing of clustered protocadherins as a key determinant of meningioma progression [RNA-seq]No linked publicationGSE304087
- DNA methylation (array)DNA methylation profiling identifies long-range epigenetic silencing of clustered protocadherins as a key determinant of meningioma progression [discovery]No linked publicationGSE304094
COHORT 15
2 linked records · ~68 total samplessnRNA-seqSpatial transcriptomics
- snRNA-seqSingle-nuclei RNA-seq of meningiomaMaas et al., 2026GSE313693
- Spatial transcriptomicsSpatial transcriptomic profiling (Visium) of meningiomaMaas et al., 2026GSE313694
COHORT 16
2 linked records · ~20 total samplesBulk RNA-seqDNA methylation (array)
- Bulk RNA-seqGenomic hallmarks of depot medroxyprogesterone acetate-associated meningiomas [RNA-seq]Huq et al., 2026GSE335175
- DNA methylation (array)Genomic hallmarks of depot medroxyprogesterone acetate-associated meningiomas [methylation]Huq et al., 2026GSE335176
COHORT 17
2 linked records · ~92 total samplesDNA methylation (array)miRNA-seq
- DNA methylation (array)Integrated genomic analyses of de novo pathways underlying atypical meningiomas [methylation]Harmancı et al., 2017GSE91375
- miRNA-seqIntegrated genomic analyses of de novo pathways underlying atypical meningiomas [miRNA-seq]Harmancı et al., 2017GSE93519
COHORT 18
2 linked records · ~10 total samplesBulk RNA-seqDNA methylation (array)
- Bulk RNA-seqAdjacent (not core)Gene expression profile of hypoxia-treated IOMM-Lee cells (malignant grade 3 meningioma cells)Dalal et al., 2025GSE282349
- DNA methylation (array)Adjacent (not core)GSE282351