Overview
- Modality
- scRNA-seq
- Sample count
- 2
- Patient count
- 1
- Institution
- Baylor College of Medicine
- Corresponding author
- Arif Harmanci, Akash Patel
- Platform
- Illumina NextSeq 500 (GPL18573)
- Access type
- open
- Tissue preservation
- Not reported
- WHO edition
- Not reported
Cohort detail
- Grade breakdown
- Not reported
- Sex distribution
- Not reported
- Age distribution
- Not reported
- Anatomic location
- convexity (parietal and frontal regions, one sample each); source overall_design literally reads 'postal and frontal regions', apparently a typo for 'parietal'
- Brain invasion
- Not reported
- Normal/control tissue
- None
Interactive gene-expression viewer
Both samples merged (unintegrated) · 42,936 cells, 200 genes, 2 samples merged.
Both samples were merged by raw concatenation, not batch-corrected/integrated (same approach ScPCA documents for its own merged per-project objects) -- use "color by sample" to check whether cells separate by patient/site rather than assuming a shared embedding means removed batch effects.
Loading…
Priority attributes
Single-cell resolutionPeer-reviewed
Publications
- Harmanci A, et al. XCVATR: detection and characterization of variant impact on the Embeddings of single -cell and bulk RNA-sequencing samples. BMC genomics, 2022. PMID 36539717 · DOI